Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs11393850 chr5:94606282 A/AG 3.02E-8 175 2.15 18.48 14.6 KM Plot
PAAD rs114003530 chr1:227602109 G/A 6.4E-5 175 15.47 15.65 3.9 KM Plot
PAAD rs114006056 chr1:227537248 C/G 1.03E-5 175 15.55 15.65 3.9 KM Plot
PAAD rs114038031 chr1:227459144 A/C 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs114087988 chr1:227532395 T/C 1.03E-5 175 15.55 15.65 3.9 KM Plot
PAAD rs114098136 chr1:227235510 A/G 4.08E-5 176 15.55 15.43 3.9 KM Plot
PAAD rs114115900 chr4:78454100 T/A 2.53E-5 178 15.57 14.63 3.9 KM Plot
PAAD rs11416637 chr5:172100011 G/GT 7.62E-5 176 15.37 16.03 3.9 KM Plot
PAAD rs114221628 chr1:227530286 A/G 9.04E-6 176 15.57 15.65 3.9 KM Plot
PAAD rs11430498 chr6:41246394 C/CA 9.82E-5 172 15.87 14.1 3.43 KM Plot
PAAD rs114312101 chr1:227303589 T/A 4.74E-5 174 15.53 15.65 3.9 KM Plot
PAAD rs114346155 chr11:28551162 C/T 0 174 15.43 14.33 1.03 KM Plot
PAAD rs1143699 chr19:5210762 A/G 6.99E-6 178 3.67 15.57 15.47 KM Plot
PAAD rs114398201 chr1:227493378 T/C 3.22E-5 178 15.55 15.43 3.9 KM Plot
PAAD rs11442251 chr11:74677818 C/CG 9.38E-5 178 4.27 15.38 15.67 KM Plot